Cyanine 5: Fluorescent Dye

(DB-410901)

Cyanine 5 is an intensely bright far-red fluorescent dye that is structurally identical to Cy5. Known for its exceptionally high extinction coefficient and strong signal generation, it remains one of the most fundamental and widely used fluorophores in life sciences.


Because it emits in the far-red spectrum, Cyanine 5 helps researchers completely avoid the natural background autofluorescence of cells and tissues. It is perfect for a variety of imaging applications, including confocal microscopy, flow cytometry (FACS), DNA microarrays, and highly multiplexed labeling panels.

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Key Parameters: Maximize your signal with no background

Exceptional Brightness: Cyanine 5 features a massive molar extinction coefficient (~250,000 M⁻¹cm⁻¹). This highly efficient light absorption generates an incredibly strong signal, making it ideal for detecting low-abundance targets.

Applications: Confocal Microscopy, Super Resolution Microscopy, Flow Cytometry (FACS), DNA/RNA microarrays, whole-animal imaging, cell cultures and tissue labeling.

Cost-effective protocol compatibility: Offers the exact same spectral properties and performance as standard Cy5 at a more accessible price. It serves as a direct, highly economical substitute for Alexa Fluor® 647 when extreme photostability is not strictly required.

Zero background for seamless multiplexing: Emitting in the far-red region (~662 nm), Cyanine 5 bypasses the natural green/yellow autofluorescence of biological samples. This guarantees a high signal-to-noise ratio and makes it the perfect anchor dye for multi-color multiplexing panels.

Cyanine 5: Pick your modification

Name (click for product information)

Availability

Cyanine 5 NHS ester

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Cyanine 5 Carboxylic Acid

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Cyanine 5 Amine

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Cyanine 5 Alkyne

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Cyanine 5 Azide

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Cyanine 5 PEG4 Alkyne

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Cyanine 5 PEG4 Azide

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Cyanine 5 DBCO

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Cyanine 5 Maleimide

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Cyanine 5 PEG5-Biotin

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Cyanine 5 TCO

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Optical Data of Cyanine 5

Name

Color

Excitation (nm)

Emission (nm)

Extinction coeficient (ε)

Cell Permeability

Cyanine 5

Red

647

665

73 000

Yes

Cyanine 5: Absorption and emission spectra of Cyanine 5

Absorption and emission spectra of Cyanine 5:The absorption and emission spectra of Cyanine 5 visualized. The absorption peak at 647 nm ensures efficient excitation, while the emission peak at 665 nm provides strong fluorescence for high-sensitivity detection. Thanks to its high photostability, excellent pH resistance, and superior brightness, Cyanine 5 is ideal for flow cytometry, confocal microscopy, and labeling of cell cultures and tissues.

Cyanine 5: Structure

Cyanine 5:Structure presented as Cyanine 5

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